Identified secondary metabolite regions

Region Type From To Most similar known cluster Similarity MIBiG BGC-ID
The following regions are from record NZ_CP019870.1:
Region 1 Proline2aminovalerate 381425 407280
Region 2 Eut_pathway 1977910 2012158
Region 3 Arginine_degradation 2987545 3011269
Region 4 Leucine_reduction 3587315 3616451

NZ_CP019870 - Region 1 - Proline2aminovalerate

Region description

Download region GenBank file
NZ_CP019870 - Genomic region 1. Type = proline2aminovalerate. Location: 381425 - 407280 nt. Click on genes for more information.
Show pHMM detection rules used
proline2aminovalerate: (minimum(2, [GRDB, Gly_reductase, Pro_racemase]) and Pro_racemase and Gly_reductase)

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
other genes

NZ_CP019870 - Region 2 - Eut_pathway

Region description

Download region GenBank file
NZ_CP019870 - Genomic region 2. Type = EUT_pathway. Location: 1977910 - 2012158 nt. Click on genes for more information.
Show pHMM detection rules used
EUT_pathway: (minimum(3, [Aldedh, BMC, EutA, EutB, EutC, EutH]) and EutB and EutC)

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
other genes

NZ_CP019870 - Region 3 - Arginine_degradation

Region description

Download region GenBank file
NZ_CP019870 - Genomic region 3. Type = arginine_degradation. Location: 2987545 - 3011269 nt. Click on genes for more information.
Show pHMM detection rules used
arginine_degradation: (minimum(6, [AdoMet_dc, Aminotran_1_2, Aminotran_5, Arginase, Beta_elim_lyase, Cys_Met_Meta_PP, OKR_DC_1_C, Sacchrp_dh_C, Sacchrp_dh_NADP, Spermine_synt_N, Spermine_synth]) and Beta_elim_lyase and Arginase and OKR_DC_1_C and Aminotran_5 and Aminotran_1_2 and AdoMet_dc)

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
other genes

NZ_CP019870 - Region 4 - Leucine_reduction

Region description

Download region GenBank file
NZ_CP019870 - Genomic region 4. Type = Leucine_reduction. Location: 3587315 - 3616451 nt. Click on genes for more information.
Show pHMM detection rules used
Leucine_reduction: (minimum(5, [Acyl-CoA_dh_1, Acyl-CoA_dh_2, Acyl-CoA_dh_M, Acyl-CoA_dh_N, AlaDh_PNT_C, BcrAD_BadFG, CoA_transf_3, ETF, FGGY_C, FGGY_N, Hacid_dh, Hacid_dh_C]) and minimum(2, [HleuD1, HleuD2, HleuS1, HleuS2]))

Legend:

core biosynthetic genes
additional biosynthetic genes
transport-related genes
regulatory genes
resistance genes
other genes